Comp2Smoker 24 Weeks P1...1	Comp2Smoker 24 Weeks P1...2	Comp2Smoker 24 Weeks P1...3	Comp2Smoker 24 Weeks P1...4	Comp2Smoker 24 Weeks P1...5	Comp2Smoker 24 Weeks P1...6
1	Coefficients	Standard Errors	Test Statistics W	p Values	Adjusted p Values	Differential Abundance
Streptococcus mitis (SP1) 	-0.182111793127142	0.585371487055807	-0.311104652608028	0.755721064273456	1	FALSE
Corynebacterium durum (SP10) 	0.310091506631487	0.430885591425576	0.719660886328447	0.471733814188694	1	FALSE
Actinomyces sp._HMT_175 (SP100) 	0.203246668263706	0.549963293444911	0.369564061249598	0.711707333083646	1	FALSE
Lachnoanaerobaculum saburreum (SP101) 	0.489158633427125	0.422104749733798	1.15885602740935	0.24651487534842	1	FALSE
Prevotella intermedia (SP104) 	-0.159633974783795	0.43838843206803	-0.36413820052401	0.715754812235127	1	FALSE
Neisseria elongata (SP105) 	0.603400855921541	0.355504916902266	1.69730663974874	0.0896387025927104	1	FALSE
Solobacterium moorei (SP106) 	-0.163122319867595	0.359979440046399	-0.453143434654405	0.650445460748266	1	FALSE
Prevotella maculosa (SP107) 	-0.0883374654072469	0.308069958223815	-0.286744822236347	0.77430771484682	1	FALSE
Fusobacterium nucleatum_subsp._vincentii (SP109) 	0.637333262692096	0.418244493951996	1.52382941534969	0.127551329429892	1	FALSE
Saccharibacteria_(TM7)_[G-5] bacterium_HMT_356 (SP111) 	-0.000849203779173385	0.493173393024927	-0.00172191726314494	0.998626109479687	1	FALSE
Streptococcus salivarius (SP115) 	-0.512874274482324	0.554007068118124	-0.925754027334847	0.354573823504041	1	FALSE
Peptostreptococcaceae_[XI][G-5] [Eubacterium]_saphenum (SP117) 	0.0976924715279171	0.315543401136534	0.309600743276663	0.756864590994922	1	FALSE
Leptotrichia hongkongensis (SP119) 	-0.0521038893759641	0.492497651442838	-0.105795203740198	0.915744842295007	1	FALSE
Selenomonas sputigena (SP12) 	-0.102487297235968	0.448821483436585	-0.228347574744489	0.819376042058726	1	FALSE
Fretibacterium sp._HMT_359 (SP120) 	0.316303043766465	0.324044884072389	0.976108740836671	0.329010580258344	1	FALSE
Peptidiphaga gingivicola (SP121) 	-0.202499716044429	0.4624534756034	-0.437881271797583	0.661472352447315	1	FALSE
Olsenella sp._HMT_807 (SP124) 	0.440730199968175	0.55794803535949	0.789912629917604	0.42957879487673	1	FALSE
Selenomonas noxia (SP128) 	0.340144880190312	0.421189477277494	0.807581619533703	0.419331471293218	1	FALSE
Capnocytophaga leadbetteri (SP129) 	0.631959183825229	0.427606058106282	1.47790044562033	0.139434427046028	1	FALSE
Parvimonas micra (SP13) 	0.0450405573921341	0.486431905768836	0.0925937564086069	0.926226304103513	1	FALSE
Gemella haemolysans (SP131) 	-0.584400972387952	0.373121316205685	-1.56624922513351	0.117290282745478	1	FALSE
Dialister invisus (SP134) 	0.522192368694672	0.476182124165086	1.09662320821106	0.272806137879291	1	FALSE
Actinomyces sp._HMT_170 (SP136) 	0.457239607311299	0.505630823997158	0.904295358611026	0.365838807246196	1	FALSE
Leptotrichia wadei (SP137) 	-0.101940245236283	0.541323131692016	-0.188316809809416	0.850628308771575	1	FALSE
Treponema sp._HMT_237 (SP140) 	-0.0379497876982605	0.308227123410538	-0.123122803984106	0.902009853698002	1	FALSE
Bergeyella sp._HMT_322 (SP141) 	-0.11689374498792	0.436433955387484	-0.267838337381739	0.788823759504194	1	FALSE
Gemella morbillorum (SP142) 	0.00699226995666427	0.43773879372133	0.0159736127045565	0.987255443020768	1	FALSE
Leptotrichia sp._HMT_417 (SP143) 	-0.157608603295101	0.339445371919932	-0.464312128940375	0.642424135379165	1	FALSE
Stomatobaculum longum (SP145) 	-0.22146163648734	0.391647145559505	-0.565462148769044	0.571759462776939	1	FALSE
Veillonellaceae_[G-1] bacterium_HMT_150 (SP146) 	0.262175813598638	0.362148369933654	0.723945861323824	0.469098972915466	1	FALSE
Prevotella salivae (SP147) 	-0.0263779688705737	0.336654266792052	-0.0783532884401761	0.937547029666256	1	FALSE
Neisseria mucosa (SP149) 	-0.113240562921659	0.32300486512532	-0.350584697471115	0.725899938406237	1	FALSE
Campylobacter showae (SP151) 	0.517010450551208	0.363638105966963	1.4217719267248	0.155092471818544	1	FALSE
Porphyromonas endodontalis (SP156) 	0.302601686307279	0.455471700571389	0.664369895929135	0.506453595463678	1	FALSE
Scardovia wiggsiae (SP158) 	-0.386821158684727	0.558094230513938	-0.69311083601153	0.488239997919984	1	FALSE
Capnocytophaga endodontalis (SP159) 	0.176464436312455	0.382408726770545	0.461455045241	0.644472167091457	1	FALSE
Veillonellaceae_[G-1] bacterium_HMT_145 (SP163) 	-0.203035891269356	0.294778256618558	-0.688774991746027	0.490964875574664	1	FALSE
Streptococcus intermedius (SP167) 	0.728865042460275	0.518268908325071	1.40634529826573	0.159621615169338	1	FALSE
Mycoplasma faucium (SP169) 	0.0162850042899661	0.306551933628456	0.0531231497945915	0.957633786624109	1	FALSE
Fusobacterium nucleatum (SP17) 	0.845127294034374	0.398901575344326	2.1186361405188	0.0341212289889017	1	FALSE
Treponema sp._HMT_257 (SP170) 	-0.251775938043446	0.303460281611076	-0.82968333353796	0.406717846906935	1	FALSE
Lachnoanaerobaculum orale (SP174) 	-0.694432773914604	0.311716311672619	-2.22777168826486	0.0258957437187114	1	FALSE
Actinomyces sp._HMT_897 (SP175) 	0.159162143396045	0.428367373618901	0.371555242527981	0.710224018233458	1	FALSE
Saccharibacteria_(TM7)_[G-1] bacterium_HMT_347 (SP176) 	-0.143088974413055	0.459786935197072	-0.31120713412991	0.7556431598948	1	FALSE
Capnocytophaga granulosa (SP177) 	0.716995593402159	0.299553887581957	2.3935446112546	0	0	TRUE
Catonella morbi (SP18) 	0.237204899306386	0.374235011591739	0.63383941095591	0.526185630115836	1	FALSE
Leptotrichia sp._HMT_215 (SP184) 	-0.101158776624083	0.318082458340961	-0.318026895138143	0.750464535828056	1	FALSE
Saccharibacteria_(TM7)_[G-3] bacterium_HMT_351 (SP185) 	-0.0157876186521475	0.316299605705317	-0.0499134945708917	0.96019132359578	1	FALSE
Prevotella veroralis (SP19) 	-0.0245341618931972	0.322386892009025	-0.0761016111427706	0.939338258353572	1	FALSE
Prevotella pleuritidis (SP193) 	0.150357255013579	0.431569695073687	0.348396230620195	0.727542632954078	1	FALSE
Lautropia mirabilis (SP194) 	0.832778368275281	0.471885138472449	1.7647904127074	0.0775989965388394	1	FALSE
Granulicatella adiacens (SP20) 	0.515902126030796	0.539348550325669	0.956528251942615	0.338805417911952	1	FALSE
Veillonellaceae_[G-1] bacterium_HMT_132 (SP200) 	-0.241366895203324	0.301642887150777	-0.800174330259199	0.423609800203238	1	FALSE
Saccharibacteria_(TM7)_[G-1] bacterium_HMT_346 (SP207) 	-0.542580225119931	0.450365064076556	-1.20475647069219	0.228297328725912	1	FALSE
Slackia exigua (SP211) 	0.1322249588156	0.316080614210999	0.418326695376937	0.675708274204845	1	FALSE
Bulleidia extructa (SP212) 	-0.0046243338453664	0.299381548879298	-0.015446288733147	0.987676134754123	1	FALSE
Streptococcus cristatus (SP214) 	-0.240648576706227	0.559092857145434	-0.430426848833142	0.666885168242259	1	FALSE
Neisseria sicca (SP215) 	-0.073368968292941	0.390992944911884	-0.187647806047948	0.851152748043298	1	FALSE
Peptococcus sp._HMT_167 (SP218) 	0.0760568868103679	0.362798943372517	0.209639218084143	0.83394926812076	1	FALSE
Tannerella sp._HMT_808 (SP22) 	-0.462172148282251	0.32410662973778	-1.42598794926279	0.153871820570212	1	FALSE
Oribacterium sp._HMT_078 (SP220) 	0.593887273624938	0.448674501003087	1.32364837381488	0.185619851602472	1	FALSE
Peptostreptococcaceae_[XI][G-4] bacterium_HMT_369 (SP222) 	0.141116442296182	0.278178410544058	0.507287542624848	0.61195307804335	1	FALSE
Fretibacterium sp._HMT_360 (SP223) 	-0.277965082409563	0.354554699635901	-0.783983635515226	0.433049712586077	1	FALSE
Peptostreptococcus stomatis (SP226) 	-0.115763726632889	0.340663705103093	-0.339818198706715	0.733993442044626	1	FALSE
Streptococcus oralis_subsp._tigurinus_clade_070 (SP230) 	-0.660973261152641	0.54264615815133	-1.21805572788799	0.223202796216746	1	FALSE
Treponema sp._HMT_231 (SP231) 	0.575373470509639	0.350685741732449	1.64070962128997	0.100857706769605	1	FALSE
Bacteroidales_[G-2] bacterium_HMT_274 (SP232) 	0.119889574815617	0.445140837111977	0.269329535329642	0.787676105703861	1	FALSE
Pseudoramibacter alactolyticus (SP233) 	0.0217730648543162	0.287197239642275	0.0758122358050382	0.939568481377586	1	FALSE
Capnocytophaga sputigena (SP24) 	0.175132253918049	0.363975266343409	0.481165260698821	0.630399048733178	1	FALSE
Filifactor alocis (SP245) 	-0.0928635221848291	0.34555692126845	-0.268735818816626	0.788132985942963	1	FALSE
Phocaeicola abscessus (SP252) 	0.257783042886034	0.263867659639787	0.976940649861906	0.328598535699565	1	FALSE
Kingella oralis (SP253) 	0.437268858986282	0.494039149183781	0.885089490799887	0.376108367050944	1	FALSE
Actinomyces israelii (SP256) 	-0.023134999557629	0.525997444315303	-0.0439831025942419	0.964917873008644	1	FALSE
Arachnia propionica (SP258) 	-0.111028050104178	0.400269718916931	-0.277383086596215	0.781485967238071	1	FALSE
Shuttleworthia satelles (SP260) 	-0.249781975465852	0.3508023580271	-0.71203049167234	0.476445894581678	1	FALSE
Actinomyces sp._HMT_448 (SP264) 	-0.769959234002051	0.72948490650302	-1.05548343377391	0.291204282145956	1	FALSE
Rothia aeria (SP269) 	0.383961889551345	0.502832251833581	0.763598373316798	0.445106618961974	1	FALSE
Aggregatibacter sp._HMT_458 (SP27) 	-0.297030309539511	0.371106658236214	-0.800390677308861	0.42348448070861	1	FALSE
Schaalia sp._HMT_180 (SP275) 	-0.399664441263168	0.480312924737915	-0.832091789912268	0.405357135663568	1	FALSE
Saccharibacteria_(TM7)_[G-1] bacterium_HMT_349 (SP276) 	0.349664666815143	0.462434907234014	0.756138131756988	0.449566381763551	1	FALSE
Actinomyces naeslundii (SP3) 	-0.0379527457873963	0.421119636090618	-0.0901234293886725	0.928189131018269	1	FALSE
Prevotella melaninogenica (SP30) 	-0.0326763987907847	0.373136084884104	-0.0875723365134574	0.930216589949723	1	FALSE
Actinomyces oris (SP31) 	-0.490358624037705	0.617064166741812	-0.79466391092983	0.426809030611061	1	FALSE
Clostridiales_[F-1][G-1] bacterium_HMT_093 (SP316) 	0.261074348421354	0.262459453306118	0.994722594795819	0.319871202081298	1	FALSE
Mogibacterium timidum (SP319) 	0.156175866057407	0.366214293416411	0.426460323545658	0.669772453281714	1	FALSE
Veillonellaceae_[G-1] bacterium_HMT_155 (SP335) 	-0.0589363065156217	0.318981766430351	-0.184763872791739	0.85341424526605	1	FALSE
Lancefieldella parvula (SP338) 	0.3297374083166	0.501960609753807	0.656898971571343	0.511245879554088	1	FALSE
Streptococcus gordonii (SP34) 	0.437478918103734	0.549348353055059	0.796359751823789	0.425822964831571	1	FALSE
Lancefieldella rimae (SP341) 	0.286076035751177	0.508290288717696	0.562820187796394	0.573557332099905	1	FALSE
Fretibacterium fastidiosum (SP345) 	0.221955152231145	0.392069418563883	0.566111871321533	0.571317733766955	1	FALSE
Corynebacterium matruchotii (SP35) 	-0.0637721470327083	0.548745585339271	-0.11621441472423	0.907482612863404	1	FALSE
Saccharibacteria_(TM7)_[G-1] bacterium_HMT_957 (SP358) 	-0.313795971062033	0.296805881256228	-1.05724310358641	0.290400652560432	1	FALSE
Prevotella sp._HMT_300 (SP36) 	-0.102875687069355	0.408416902271655	-0.251888906891831	0.801126934211845	1	FALSE
Actinomyces massiliensis (SP360) 	0.346392549402776	0.44727341549772	0.774453695213061	0.438662540910195	1	FALSE
Actinomyces viscosus (SP366) 	-0.138258005194312	0.397625292108785	-0.347709282930842	0.728058524424674	1	FALSE
Peptostreptococcaceae_[XI][G-1] [Eubacterium]_infirmum (SP379) 	-0.623590081752175	0.282176535091167	-2.20992890691886	0.0271100966737973	1	FALSE
Streptococcus parasanguinis_clade_411 (SP4) 	-0.499301081086126	0.629201602617373	-0.793547058699655	0.427459163226785	1	FALSE
Streptococcus sanguinis (SP40) 	0.68349206665602	0.647604868977836	1.055415268472	0.29123544284475	1	FALSE
Actinomyces sp._HMT_414 (SP407) 	-0.577970321780401	0.324311261685518	-1.78214693740995	0.0747252732511474	1	FALSE
Streptococcus mutans (SP41) 	-0.350091781702148	0.678623256119765	-0.515885328928902	0.605934501381955	1	FALSE
Prevotella oralis (SP417) 	-0.0404192825562005	0.342540525750855	-0.117998541829761	0.906068813263117	1	FALSE
Prevotella oris (SP42) 	0.539586148120154	0.505510400780682	1.06740859789798	0.285787367632875	1	FALSE
Peptidiphaga sp._HMT_183 (SP428) 	-0.000954301740868108	0.493102895963018	-0.00193529940440601	0.998455855448596	1	FALSE
Schaalia meyeri (SP43) 	-0.378832678585281	0.456304971451754	-0.830218170492442	0.40641544363603	1	FALSE
Peptostreptococcaceae_[XI][G-9] [Eubacterium]_brachy (SP44) 	0.564623377105368	0.453517108325624	1.24498804287659	0.213136145513271	1	FALSE
Bifidobacterium dentium (SP46) 	-0.620640395657676	0.41925641067327	-1.4803360899384	0.138783576445602	1	FALSE
Olsenella uli (SP464) 	-0.0835960231943	0.333192562240963	-0.250894025461	0.801896043701896	1	FALSE
Actinomyces dentalis (SP47) 	-0.252533525924841	0.534444483406301	-0.472515918426755	0.636558582239624	1	FALSE
Eikenella corrodens (SP48) 	0.682198641906296	0.368038773754457	1.85360535507445	0.0637956409157196	1	FALSE
Prevotella denticola (SP49) 	0.102328337740705	0.523745297679708	0.195378055314367	0.845096994880371	1	FALSE
Streptococcus sp._HMT_064 (SP5) 	0.573119161545298	0.468398793696015	1.22357095974343	0.221114120260736	1	FALSE
Treponema socranskii (SP51) 	0.278985854808737	0.453939437475957	0.614588272744013	0.538826661079528	1	FALSE
Schaalia odontolytica (SP52) 	-0.162740830047195	0.422813550142097	-0.384899750711637	0.700311690604078	1	FALSE
Actinomyces sp._HMT_169 (SP53) 	0.0494412713583062	0.636848334567736	0.0776342948150516	0.938118961379352	1	FALSE
Treponema denticola (SP54) 	-0.0283968029815688	0.33245044306805	-0.0854166495297953	0.931930157125144	1	FALSE
Prevotella oulorum (SP57) 	-0.332366173704013	0.364643734667032	-0.911481926345194	0.362041504288513	1	FALSE
Rothia mucilaginosa (SP59) 	-0.194695270263673	0.475245762865668	-0.409672816627942	0.682045973361407	1	FALSE
Capnocytophaga gingivalis (SP6) 	0.331459564901303	0.430436741926296	0.770054069775622	0.441267819729272	1	FALSE
Alloprevotella tannerae (SP63) 	-0.251241886287786	0.476679117836882	-0.527067112626821	0.598146983902897	1	FALSE
Tannerella forsythia (SP64) 	-0.00661139158087995	0.41717627158142	-0.0158479569219449	0.987355689140014	1	FALSE
Veillonella atypica (SP65) 	0.308074367543919	0.38797603815185	0.794055140651086	0.427163331350707	1	FALSE
Porphyromonas gingivalis (SP67) 	-0.563517793409935	0.409150516487576	-1.37728725909368	0.168423452787079	1	FALSE
Streptococcus constellatus (SP68) 	0.287155464438048	0.344199758862233	0.834269801313205	0.40412896508598	1	FALSE
Streptococcus anginosus (SP69) 	-0.355733398792691	0.519327730065185	-0.684988261166104	0.493351328544163	1	FALSE
Prevotella sp._HMT_314 (SP70) 	-0.333680707612115	0.306997656359547	-1.08691613991124	0.277073872707357	1	FALSE
Actinomyces sp._HMT_171 (SP74) 	0.235097219778236	0.556475184299062	0.422475658235084	0.672677864363777	1	FALSE
Campylobacter gracilis (SP78) 	1.13002403972877	0.431218898624977	2.62053459004711	0.00877920234090367	1	FALSE
Veillonella parvula (SP8) 	-0.678457285413184	0.54033237020081	-1.25562953994602	0.209250316131351	1	FALSE
Parvimonas sp._HMT_110 (SP80) 	0.327496766172713	0.348609432137215	0.939437479258475	0.347506177806713	1	FALSE
Selenomonas artemidis (SP81) 	-0.0751756353004543	0.3448482682291	-0.217996267420752	0.827432019661215	1	FALSE
Haemophilus parainfluenzae (SP83) 	1.29367264094851	0.610081931921756	2.12049000840502	0.0339647432596421	1	FALSE
Anaeroglobus geminatus (SP84) 	0.253297295554175	0.355837846833509	0.711833487663525	0.476567893129974	1	FALSE
Cardiobacterium hominis (SP86) 	0.211933237205347	0.356886648757125	0.593839074516837	0.552619751632355	1	FALSE
Campylobacter concisus (SP88) 	-0.556854424368139	0.415193045472159	-1.341194007079	0.179857471623241	1	FALSE
Streptococcus oralis (SP89) 	0.365740637022126	0.576968714590103	0.633900292638847	0.526145894595382	1	FALSE
Porphyromonas pasteri (SP9) 	0.120322200682316	0.329960582469984	0.364656286461919	0.715367993153679	1	FALSE
Prevotella loescheii (SP91) 	0.160717742453518	0.34026519947099	0.472330825201595	0.636690671293153	1	FALSE
Mogibacterium neglectum (SP92) 	-0.174972866505623	0.33142057454329	-0.527948111690839	0.597535350525113	1	FALSE
Rothia dentocariosa (SP93) 	-0.194108389018053	0.580952669579685	-0.334120831493018	0.73828838123534	1	FALSE
Megasphaera micronuciformis (SP95) 	-0.298416330145791	0.30842546820233	-0.967547627908688	0.333270343852414	1	FALSE
Alloprevotella rava (SP96) 	0.0167516356451029	0.346485288808117	0.0483473214771318	0.961439441538386	1	FALSE
Prevotella sp._HMT_317 (SP97) 	0.00491210834293415	0.425676456408349	0.0115395349425245	0.990792987566594	1	FALSE
Actinomyces sp._HMT_525 (SP98) 	-0.383264943009131	0.490588814388376	-0.781234573166844	0.434664542943868	1	FALSE
Schaalia sp._HMT_178 (SP99) 	-0.495464223916335	0.362478505135986	-1.36687890977275	0.171663263607794	1	FALSE
Actinomyces naeslundii_nov_97.422% (SPN109) 	-0.00722121388228159	0.502897288519839	-0.0143592221456106	0.988543392047333	1	FALSE
Actinomyces sp._HMT_175_nov_97.633% (SPN133) 	-0.724154387154843	0.389411543879433	-1.85961201853597	0.0629404376939865	1	FALSE
Streptococcus sanguinis_nov_97.727% (SPN14) 	-0.170739924793894	0.423803378924939	-0.402875326824929	0.687039943071734	1	FALSE
Actinomyces viscosus_nov_95.849% (SPN249) 	-0.259558321030676	0.405930486591308	-0.639415687178974	0.522552546499299	1	FALSE
Actinomyces viscosus_nov_95.841% (SPN469) 	0.0752547625984007	0.395534118813946	0.190261115334527	0.849104522513804	1	FALSE
Actinomyces israelii_nov_97.037% (SPN579) 	-0.416922058491053	0.39004960237702	-1.06889497117871	0.285116998211919	1	FALSE
Veillonella dispar_parvula (SPP45) 	0.260574678381743	0.469551870835264	0.554943329089966	0.578933423705206	1	FALSE
